Download a FREE E-Book with 20 Easy Weeknight Dinners
  • Facebook
  • Instagram
  • Pinterest
  • YouTube
  • TikTok
About
Lifestyle
Favorite Products
Contact
Mad About Food
  • Christmas
  • All Recipes
  • 30 Minute Meals
  • Meal Prep
  • High Protein
    • Facebook
    • Instagram
    • Pinterest
    • YouTube
    • TikTok
Search

Trending:

Christmas🎄
30 Minute Meals
High Protein
Air Fryer
One Pan
Meal Prep
Breakfast
Home / Recipes

Healthy Double Chocolate Muffins

Jump to Recipe

By: Madeline Tague

Updated: April 29, 2024

This site may contain affiliate links. Please read my disclosure policy.

These Healthy Double Chocolate Muffins are so delicious and fluffy, no one will know they’re gluten free. Serve these healthy chocolate muffins for dessert or a snack!

Weeknight-easy

Beginner-friendly

You’ll Learn: How to batch, store, and reheat for meal prep

Worth It: Simple ingredients, minimal work, great taste

Bonus: Easy to customize to your preferences

side view of healthy chocolate muffins stacked on  a cooling rack

These Double chocolate Chip muffins are the perfect balance of fluffy and rich

I don’t have much of a sweet tooth, but when I am craving something sweet, I want it to be extra chocolaty. Therefore, I created this healthy chocolate chip muffin recipe to taste as close as possible to a slice of rich chocolate cake.

It might shock you to see that I use some pumpkin puree to make these muffins extra moist. They don’t taste like the pumpkin at all, but it gives them extra moisture and rise like a true bakery muffin.

There is just something about reaching for a soft and fluffy muffin as a snack that is so satisfying. My favorite time to enjoy these double chocolate muffins is in the mid afternoon as a little pick me up.

They are so rich and delicious that you could even serve them with a bit of chocolate buttercream on top like a cupcake.

three quarter view of healthy double chocolate muffins on a cooling rack

Kitchen tools

  • Muffin pan
  • Cupcake liners – you can use folded parchment paper instead of the liners
  • Mixing bowls
  • Measuring cups and measuring spoons
  • Liquid measuring cup
  • Mixing spoons

serving Suggestions

Like I said, my favorite way to enjoy these gluten free chocolate chip muffins is in the mid afternoon. They are perfect alongside a cup of coffee or tea.

I love making a batch of my homemade cold brew with a splash of cream. Then, I take a nice break from work with my coffee and muffin.

You could also serve them as part of a brunch spread alongside your favorite savory breakfast items.

chocolate muffin with the wrapper pulled down sitting on a cooling rack on a blue towel

Ingredients

Pumpkin puree is the secret ingredient for making light and fluffy healthy chocolate muffins. This keeps the muffins moist without making them dense.

  • Eggs
  • Pumpkin puree – canned pumpkin, but check that the only ingredient is pumpkin
  • Maple syrup
  • Coconut oil
  • Cocoa powder
  • Baking powder
  • Baking soda
  • Salt
  • Chocolate chips

Ingredient substitutions

It can be difficult to mess with gluten free baking recipes SO I recommend baking the recipe just as it is written above. You can attempt to use plain all purpose flour for this recipe, but you will likely need about a full cup of the flour for it to be equivalent to the coconut flour.

If you want to make this recipe dairy free, simply use dairy free chocolate chips. For a fun spin on the recipe you could also use peanut butter chips or butterscotch chips in place of regular semi sweet chocolate chips.

three quarter view of chocolate chip muffins on a cooling rack

How to make some healthy double chocolate muffins

Step 1: Preheat oven and mix batter

To begin, preheat oven to 350F and line 10 cupcake pan slots with cupcake liners. Next, add eggs, pumpkin puree, maple syrup, and melted coconut oil to a large mixing bowl and mix thoroughly.

Then, in a separate mixing bowl, combine coconut flour, cocoa powder, baking soda, baking powder and sea salt. Fold dry ingredients into wet ingredients and then fold in the chocolate chips.

Step 2: Fill muffin tins and bake

Next, use an ice cream scoop and add 1/4 cup of batter to each of the 10 cupcake mold slots. Then, place in the oven and bake for 26-28 minutes.

Step 3: Cool and enjoy!

Remove them from the oven and allow the healthy chocolate muffins to cool fully before enjoying. Finally, store in an airtight container on the counter for up to 5 days.

side view of a healthy double chocolate muffin with a bite out of it

Storage and Freezing

Once cooked and cooled, store these healthy chocolate muffins in an airtight container at room temperature for up to 5 days. You can also store them in the refrigerator for up to 7 days.

If you want to keep them for longer, you can freeze these muffins for up to 4 months. You can remove them and defrost to enjoy one by one.

Check out these other healthy muffin recipes!

  • Healthy Almond Muffins
  • S’mores Muffins
  • Healthy Blueberry Jam Muffins
  • Healthy Pumpkin Chocolate Chip Muffins

You can find the full recipe below. If you make this recipe, please rate and review it in the comments, or share it with me on Instagram!

pinterest image for healthy double chocolate muffins

You can find the full recipe below. If you make this recipe, please rate and review it in the comments, or share it with me on Instagram!

Email Recipe for Later

Please enable JavaScript in your browser to complete this form.
Loading

Recipe

Healthy Double Chocolate Muffins

5 from 15 votes
Make these healthy double chocolate chip muffins with just a few simple ingredients!
Recipe By: Madeline Tague
Prep: 10 minutes minutes
Cook: 26 minutes minutes
Print Review Pin It SaveSaved!
Servings: 10 muffins

Ingredients

  • 3 eggs
  • 1/2 cup pumpkin puree canned pumpkin, but make sure pumpkin is the only ingredient
  • 1/2 cup maple syrup
  • 1/4 cup melted coconut oil or any neutral tasting vegetable oil
  • 1/4 cup coconut flour
  • 1/2 cup cocoa powder
  • 1 tsp baking soda
  • 1 tsp baking powder
  • 1/4 tsp salt
  • 1/2 cup chocolate chips
Prevent your screen from going dark

Instructions

  • Preheat oven to 350F and line 10 cupcake tin slots with cupcake liners
  • Add eggs, pumpkin puree, maple syrup, and melted coconut oil to a large mixing bowl and mix thoroughly
  • In a separate mixing bowl combine coconut flour, cocoa powder, baking soda, baking powder and sea salt
  • Fold dry ingredients into wet ingredients and then fold in the chocolate chips
  • Add 1/4 cup of batter to each of the 10 cupcake mold slots
  • Place in the oven and bake for 26-28 minutes
  • Remove from the oven and allow them to cool fully before enjoying
  • Store in an airtight container on the counter for up to 5 days

Nutrition Information

Serving: 1g, Calories: 182kcal (9%), Carbohydrates: 22g (7%), Protein: 3g (6%), Fat: 10g (15%), Saturated Fat: 4g (25%), Polyunsaturated Fat: 3g, Monounsaturated Fat: 2g, Trans Fat: 0.04g, Cholesterol: 49mg (16%), Sodium: 238mg (10%), Potassium: 171mg (5%), Fiber: 3g (13%), Sugar: 16g (18%), Vitamin A: 1978IU (40%), Vitamin C: 1mg (1%), Calcium: 64mg (6%), Iron: 1mg (6%)

This website provides approximate nutrition information for convenience and as a courtesy only. Nutrition data is gathered primarily from the USDA Food Composition Database, whenever available, or otherwise other online calculators.

Did you make my Healthy Double Chocolate Muffins?

Review Share on Insta SaveSaved!
I appreciate your reviews SO much! Mention @mad_about_food and hashtag your photo with #madaboutfood
  • Facebook
  • Email
Madeline Tague Avatar

About

Madeline Tague

Hi, I’m Madeline! I am so excited to share my healthy and approachable recipes with you. Here you will find simple, comforting recipes that the whole family will enjoy. Turn on your favorite playlist or podcast and let’s get cooking!
Learn More
  • Facebook
  • Pinterest
  • YouTube
  • Instagram
  • X
5 from 15 votes

Leave a Reply Cancel reply

Your email address will not be published. Required fields are marked *

Recipe Rating




44 responses

  1. Alyssa
    November 4, 2025

    Hi! Can you make these with another type of flour?

    Reply
    1. Madeline
      November 4, 2025

      Hi! Yes, you can attempt to use plain all purpose flour for this recipe, but you will likely need about a full cup of the flour for it to be equivalent to the coconut flour

      Reply
  2. Sarah
    October 14, 2025

    5 stars
    These are hands down the BEST chocolate muffins I have ever had or made. I will be making my second batch of the week today. Thank you!

    Reply
    1. Madeline
      October 14, 2025

      LOVE this!

      Reply
  3. Franceaz
    September 21, 2022

    These look so delicious! Could I use bananas in place of the pumpkin, and would 2 bananas be about the same amount? Thank you for the recipe!

    Reply
    1. Madeline
      September 25, 2022

      Depends on size of banana! but yes id just mash and measure to make sure you have enough!!

      Reply
  4. Madeline Burns
    September 15, 2022

    5 stars
    These muffins were EXACTLY the moist, decadent feeling treat I was looking for! Lovely texture, and great light sweetness with the right amount of chocolatey-ness. Approved by my 12 year old with a “so yum mum!”.

    Reply
    1. Madeline
      September 15, 2022

      yay!! so glad you both enjoyeed!!

      Reply
  5. Trina
    September 11, 2022

    Can you replace the eggs? My friend is Vegan.

    Reply
    1. Madeline
      September 15, 2022

      I haven’t personally tried, but if you do I would try flax eggs

      Reply
  6. Mary Margaret Gayhardt
    February 2, 2022

    5 stars
    I think I have made these about a dozen times now! Perfect recipe for a Sunday bake sesh if you want something sweet for the days ahead and love them any time of day 🙂

    Reply
    1. Madeline
      February 3, 2022

      thanks so much!

      Reply
  7. Amanda A.
    June 9, 2021

    5 stars
    ANOTHER GREAT RECIPE!!! I just baked a batch and I’ve already eaten 3!!! So good!!

    Reply
    1. Madeline
      June 17, 2021

      wonderfuL!! thank you so much!

      Reply
←Older
1 2

Welcome

Hi, I’m Madeline – food blogger and recipe developer based just outside Philadelphia. Join me for simple, comforting recipes designed for the whole family. Turn on your favorite playlist or podcast, and let’s get to cooking!

Read more

Christmas FAVORITES

  • Christmas Chex Mix Recipe with M&Ms

    Christmas Chex Mix Recipe with M&Ms

  • Classic Cold Crab Dip

    Classic Cold Crab Dip

  • Caramel Brulee Latte Syrup

    Caramel Brulee Latte Syrup

  • Stuffed Mushroom Dip

    Stuffed Mushroom Dip

  • Charcuterie Wreath

    Charcuterie Wreath

  • Cheesy Scalloped Potatoes

    Cheesy Scalloped Potatoes

All Christmas Recipes

Popular Posts

  • Oven Baked Chuck Roast Recipe

    Oven Baked Chuck Roast Recipe

  • Butternut Squash Pasta Sauce

    Butternut Squash Pasta Sauce

  • Potato Cheddar Chive Bakes (Starbucks Copycat)

    Potato Cheddar Chive Bakes (Starbucks Copycat)

  • Oven Baked Starbucks Egg Bites

    Oven Baked Starbucks Egg Bites

  • High Protein Sausage Pancake Muffins

    High Protein Sausage Pancake Muffins

  • Greek Yogurt Waffles

    Greek Yogurt Waffles

image of 6 recipes

Grab a free

E-Book With 6 Of My Top Rated Recipes

Sign me up!

Join Me And over 500k Friends On Instagram

@mad_about_food

“This is my third time making this recipe and it’s a fave for meal prepping! So delicious, quick and easy ☺️” – Jessica

Get recipe

“This was so simple and delicious!! Worked late and still quickly put together a great meal.” – Dana

Get recipe

“So good! Not only was this incredibly easy to make, the flavor was perfect. I will definitely make this again and again!” – Mandy

Get recipe
  • Facebook
  • Instagram
  • Pinterest
  • YouTube
  • TikTok

Courses

Dinners
Breakfasts
Lunch
Dips & Sauces

Popular

One Pan Meal
30 Minute Meals
Meal Prep
Chicken Recipes
Back to Top
About
Contact
Privacy Policy

©

Mad About Food

|

Branding by MRD

|

Theme by OC

Rate This Recipe

Your vote:




A rating is required
A name is required
An email is required

Recipe Ratings without Comment

Something went wrong. Please try again.