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Home / Recipes / Dessert

Healthy Carrot Cake Muffins

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By: Madeline Tague

Published: March 2, 2026

This site may contain affiliate links. Please read my disclosure policy.

Make soft and moist Healthy Carrot Cake Muffins with apple sauce, shredded carrots and a flavorful spice blend. They are the perfect afternoon sweet treat or brunch addition.

If you want to serve these as cupcakes for Easter, you can top them with some brown butter cream cheese frosting.

Carrot cake muffins laying on a piece of white parchment paper. There are a few bites taken out of the center muffin showing the soft and fluffy center
a batch of carrot cake muffins in a 12 slot muffin pan

20 minutes

Extremely easy

Quick Look: Healthy Carrot Cake Muffins

  • ⏱️ Prep Time: 10 minutes
  • 👩‍🍳 Cook Time: 27 minutes
  • 🕖 Total Time: 37 minutes
  • 🥕 Servings: 12 servings of 1 muffin per serving
  • ⚡️ Calories: 212 calories per serving (based on nutrition panel)
  • 🔥 Cooking Method: Bake in oven at 300F
  • 🛒 Main Ingredients: apple sauce, brown sugar, carrots, flour
  • ⭐️ Difficulty: Easy! Aside from grating the carrots, you just need to combine wet and dry ingredients separately, then add them together.

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Table of Contents
  • Quick Look: Healthy Carrot Cake Muffins
  • Why you’ll Love this recipe
  • Ingredients You’ll Need
  • How to make A Perfect Healthy Carrot Cake Muffin Recipe
  • Mad’s Expert Tips for the Best Healthy Carrot Cake Muffins 🥕
  • Recipe FAQs
  • Recipe

Why you’ll Love this recipe

  • Spring sweet treat – Whenever I think of early spring recipes I think of carrot cake. I love to have carrot cake or carrot cake cupcakes for a delicious Spring dessert.
  • Sweetened with apple sauce – A lot of the sweetness in this recipe comes from apple sauce rather than granulated sugar. You just need a bit of brown sugar to finish sweetening these delicious muffins!
  • Great for meal prep – I love including some kind of sweet in my meal prep. These carrot cake muffins are the perfect option because you can have them for breakfast, an afternoon snack, or dessert!

Randee left this 5 star review ⭐️⭐️⭐️⭐️⭐️

“Always impressed with Madeline’s baked recipes. This one is no different. So moist. So much flavor. Not overly sweet. And my apartment smells INCREDIBLE after baking these, no candle needed!”

Ingredients You’ll Need

Here’s a quick look at the ingredients you need to make these healthy carrot cake muffins. For a full list of ingredients and amounts please head to the full recipe.

ingredients for carrot cake muffins with labels on them
  • Eggs: the large eggs will bind everything together in your muffins. Room temperature are best
  • Unsweetened apple sauce: this will provide both sweetness and keep your muffins moist
  • Brown Sugar: the brown sugar continues sweetening the muffins and adds a great texture
  • Finely grated carrots: you want really finely shredded carrots for the best results. I do this on my box grater
  • All purpose flour: the flour builds the structure of your muffin
  • Ground cinnamon, ginger, nutmeg, cloves: this spice combination adds all of those classic carrot cake flavors
  • Walnuts: these are an optional addition, but I love incorporating some nuts

To make these muffins gluten free, use an all purpose gluten-free flour in place of the all purpose. You could also make this with whole wheat flour instead. To make these vegan, you could try making it with flax egg.

Add extra mix ins to these muffins for an even heartier carrot cake taste. You can add dried cranberries or raisins for a fruity taste. I like to use chopped walnuts in this recipe, but you could also do chopped pecans or sliced almonds!

For another fun dessert to try, make these pumpkin oat chocolate chip cookie bars or pecan pie brownies.

How to make A Perfect Healthy Carrot Cake Muffin Recipe

grated carrots in a bowl of wet ingredients with a whisk in it

Step 1: Preheat oven to 350F and line a muffin tin with liners. Whisk apple sauce, eggs, brown sugar, vegetable oil and vanilla extract together in a bowl. Fold in the finely grated carrots.

dry ingredients added to a bowl of wet ingredients with a white spatula in it

Step 2: In a separate bowl, mix together all purpose flour, baking powder, ground cinnamon, ginger, salt, nutmeg and cloves. Fold dry ingredients into wet with a flat spatula.

chopped walnuts added to the healthy carrot cake muffin mix

Step 3: Mix until just combined and then fold in the chopped walnuts.

healthy carrot cake muffin mix in a muffin tin

Step 4: Scoop 1/4 cup of batter into each of the muffin liners. Bake at 350F for 27 minutes.

If you are looking for other muffin recipes, try these coffee cake muffins or double chocolate zucchini muffins.

Mad’s Expert Tips for the Best Healthy Carrot Cake Muffins 🥕

  • Use room temperature ingredients – For the most even bake on your muffins, allow the eggs and apple sauce to get to room temperature before baking.
  • Freshly grate your carrots – For the best results, grate your carrots yourself fresh. It makes a huge difference in keeping your muffins moist.
  • Do not overmix – Only mix the batter until everything is just combined. By avoiding overmixing it, you’ll keep a light and fluffy texture.

I also use grated carrots to make these carrot cake cookies.

a healthy carrot cake muffin on parchment paper

Recipe FAQs

How do you make moist muffins?

Add an ingredient like apple sauce in this recipe! You can also use something like greek yogurt or sour cream.

Can you freeze carrot cake muffins?

You can freeze these muffins. Store them in an airtight container in the freezer for up to 3 months.

What can I add to carrot cake muffins?

I added walnuts in this recipe, but you can add almonds, pecans, raisins, or any other nut or dried fruit!

Other Muffin Recipes

  • Healthy Pumpkin Chocolate Chip Muffins

    Healthy Pumpkin Chocolate Chip Muffins

  • S’mores Muffins

    S’mores Muffins

  • Blueberry Coffee Cake Muffins

    Blueberry Coffee Cake Muffins

  • Small Batch Banana Muffins

    Small Batch Banana Muffins


You can find the full recipe below. If you make this recipe, please rate and review it in the comments, or share it with me on Instagram!

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a healthy carrot cake muffin on parchment paper

Recipe

Healthy Carrot Cake Muffins

5 from 7 votes
Make the best carrot cake recipe with these carrot cake muffins
Recipe By: Madeline Tague
Prep: 10 minutes minutes
Cook: 27 minutes minutes
Print Review Pin It SaveSaved!
Servings: 12 muffins

Ingredients

  • 1 cup apple sauce
  • 2 eggs
  • ½ cup packed brown sugar
  • ¼ cup vegetable oil
  • 2 tsp vanilla extract
  • 1 ½ cups finely grated carrots
  • 2 cups all purpose flour
  • 2 tsp baking powder
  • 1 ½ tsp ground cinnamon
  • 1 tsp ground ginger
  • ½ tsp kosher salt
  • ¼ tsp ground nutmeg
  • ⅛ tsp ground cloves
  • ½ cup chopped walnuts optional
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Instructions

  • Preheat oven to 350F and line 12 muffin slots with liners.
  • Whisk apple sauce, eggs, brown sugar, vegetable oil and vanilla extract together in a mixing bowl. Fold in the finely grated carrots.
  • In a separate bowl mix together all purpose flour, baking powder, ground cinnamon, ginger, salt, nutmeg and cloves.
  • Fold dry ingredients into wet with a flat spatula. Mix until just combined and then fold in the chopped walnuts.
  • Scoop 1/4 cup of batter into each of the muffin liners.
  • Bake at 350F for 27 minutes.

Recipe Notes

  • Mix in raisins or chopped nuts for a heartier muffin
  • Top with a simple cream cheese frosting to make healthy cupcakes
  • Store in the refrigerator to maintain freshness.
  • You can freeze these muffins. Store them in an airtight container in the freezer for up to 3 months.
  • You can also make this recipe as a bread instead of muffins. Just use a loaf pan instead of a muffin tin.
     

Nutrition Information

Serving: 10g, Calories: 212kcal (11%), Carbohydrates: 30g (10%), Protein: 4g (8%), Fat: 9g (14%), Saturated Fat: 1g (6%), Polyunsaturated Fat: 5g, Monounsaturated Fat: 2g, Trans Fat: 0.03g, Cholesterol: 27mg (9%), Sodium: 193mg (8%), Potassium: 137mg (4%), Fiber: 2g (8%), Sugar: 12g (13%), Vitamin A: 2720IU (54%), Vitamin C: 1mg (1%), Calcium: 68mg (7%), Iron: 2mg (11%)

This website provides approximate nutrition information for convenience and as a courtesy only. Nutrition data is gathered primarily from the USDA Food Composition Database, whenever available, or otherwise other online calculators.

Did you make my Healthy Carrot Cake Muffins?

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Madeline Tague

Hi, I’m Madeline! I am so excited to share my healthy and approachable recipes with you. Here you will find simple, comforting recipes that the whole family will enjoy. Turn on your favorite playlist or podcast and let’s get cooking!
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5 from 7 votes

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Recipe Rating




18 responses

  1. Randee
    January 31, 2023

    5 stars
    Always impressed with Madeline’s baked recipes. This one is no different. So moist. So much flavor. Not overly sweet. And my apartment smells INCREDIBLE after baking these, no candle needed!

    Reply
    1. Madeline
      January 31, 2023

      Aww, thanks! So good to hear. Thanks, Randee!

      Reply
  2. Stefanie
    May 31, 2022

    5 stars
    These were so delicious and easy. My one year old loved them too. One question…
    Is this nutrition information for all 10 muffins?

    Reply
    1. Madeline
      June 2, 2022

      it is per muffin, but I must say – those calculators are not controlled by me, it’s an add-on for the site, and I have found them to be very inaccurate sometimes. if you are counting calories it’s usually best to input the ingredients in your own trusted calculator. Sorry for that!

      Reply
  3. Christina
    April 15, 2022

    These are SO good!! I made them yesterday after I saw the instagram reel

    Reply
    1. Madeline
      April 15, 2022

      yay glad you liked them Christina! thanks!

      Reply
  4. Heather Willis
    March 24, 2022

    5 stars
    Loved these! Added a bit of unsweetened coconut as well. They are lovely when warmed up in the microwave!

    Reply
    1. Madeline
      March 25, 2022

      oh amazing!! love that tip to add the coconut thank you!

      Reply
  5. Frances
    June 28, 2021

    5 stars
    These were wonderful. I did a test bake on a couple muffins following the exact recipe and then actually added a baked in cream cheese swirl to the rest of them. The spice level of the unmodified recipe is perfect.

    Reply
    1. Madeline
      July 1, 2021

      amazing!! NEED to try the cream cheese swirl

      Reply
  6. Jeanne
    April 14, 2021

    5 stars
    great carrot cake muffin recipe. I made these for easter dessert and added a cream cheese frosting. Delicious, moist, flavorful, and easy! Everyone loved them!

    Reply
    1. Madeline
      April 20, 2021

      yay! thank you so muhc!!

      Reply
  7. Stephanie
    March 6, 2021

    I’ve been craving muffins and these were delicious! Very moist and just the right amount of sweet. I also added some raisins on top and in the batter. Will definitely be a meal prep go to!

    Reply
    1. Madeline
      March 8, 2021

      yay! so glad thank you!!

      Reply
  8. Stacy
    March 6, 2021

    5 stars
    These turned out sooooo moist and delicious! I am looking forward to having these as an afternoon snack this week. Had two tonight because they were just that yummy!

    Reply
    1. Madeline
      March 8, 2021

      amazing!! thank you!!

      Reply
  9. Allie
    March 4, 2021

    5 stars
    Such a tasty and easy treat! Adding this to my ever-growing list of Mad About Food bookmarked recipes!!

    Reply
    1. Madeline
      March 4, 2021

      I am so glad!! Thank you!!!!

      Reply

Welcome

Hi, I’m Madeline – food blogger and recipe developer based just outside Philadelphia. Join me for simple, comforting recipes designed for the whole family. Turn on your favorite playlist or podcast, and let’s get to cooking!

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